IL_7B7D_236
3D structure
- PDB id
- 7B7D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- ACCGAGUAG*CGAAACU
- Length
- 16 nucleotides
- Bulged bases
- 7B7D|1|LB|C|73
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7B7D_236 not in the Motif Atlas
- Homologous match to IL_5TBW_377
- Geometric discrepancy: 0.0724
- The information below is about IL_5TBW_377
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
7B7D|1|LB|A|72
7B7D|1|LB|C|73
7B7D|1|LB|C|74
7B7D|1|LB|G|75
7B7D|1|LB|A|76
7B7D|1|LB|G|77
7B7D|1|LB|U|78
7B7D|1|LB|A|79
7B7D|1|LB|G|80
*
7B7D|1|LB|C|100
7B7D|1|LB|G|101
7B7D|1|LB|A|102
7B7D|1|LB|A|103
7B7D|1|LB|A|104
7B7D|1|LB|C|105
7B7D|1|LB|U|106
Current chains
- Chain LB
- 5S rRNA
Nearby chains
- Chain LA
- Large subunit ribosomal RNA; LSU rRNA
- Chain LI
- 60S ribosomal protein L7-A
- Chain LL
- 60S ribosomal protein L10
- Chain Lo
- 60S ribosomal protein L20-A
- Chain Lp
- 60S ribosomal protein L21-A
Coloring options: