IL_7B7D_244

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

7B7D|1|2|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7B7D_244 not in the Motif Atlas

Homologous match to IL_8P9A_422

Geometric discrepancy: 0.1974

The information below is about IL_8P9A_422

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57741.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

7B7D|1|2|U|893
7B7D|1|2|U|894
7B7D|1|2|G|895
7B7D|1|2|U|896
7B7D|1|2|C|897
7B7D|1|2|A|898
7B7D|1|2|G|899
*
7B7D|1|2|C|910
7B7D|1|2|U|911
7B7D|1|2|U|912
7B7D|1|2|G|913
7B7D|1|2|G|914
7B7D|1|2|A|915
7B7D|1|2|U|916
7B7D|1|2|U|917
7B7D|1|2|U|918
7B7D|1|2|A|919

Current chains

Chain 2

18S rRNA

Nearby chains

Chain LA

Large subunit ribosomal RNA; LSU rRNA

Chain Q

40S ribosomal protein S1-A

Chain Z

40S ribosomal protein S14-B