IL_7B7D_249

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAAC*GUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7B7D_249 not in the Motif Atlas

Geometric match to IL_5TBW_064

Geometric discrepancy: 0.3266

The information below is about IL_5TBW_064

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_15698.1

Basepair signature

cWW-tSH-cSH-cWW

Number of instances in this motif group

9

Unit IDs

7B7D|1|LA|C|163
7B7D|1|LA|A|164
7B7D|1|LA|A|165
7B7D|1|LA|C|166
*
7B7D|1|LA|G|256
7B7D|1|LA|U|257
7B7D|1|LA|G|258

Current chains

Chain LA

25S rRNA

Nearby chains

Chain LN

60S ribosomal protein L13-A

Chain Ld

60S ribosomal protein L35-A