IL_7BGD_009

3D structure

PDB id

7BGD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 30S ribosomal subunit in presence of spermidine (body only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

7BGD|1|a|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BGD_009 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1278

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

7BGD|1|a|G|147
7BGD|1|a|G|148
7BGD|1|a|A|149
7BGD|1|a|U|150
7BGD|1|a|A|151
7BGD|1|a|A|152
7BGD|1|a|C|153
*
7BGD|1|a|G|168
7BGD|1|a|C|169
7BGD|1|a|U|170
7BGD|1|a|A|171
7BGD|1|a|A|172
7BGD|1|a|U|173
7BGD|1|a|A|174
7BGD|1|a|C|175

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20