IL_7BGD_022
3D structure
- PDB id
- 7BGD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 30S ribosomal subunit in presence of spermidine (body only)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 7BGD|1|a|U|542, 7BGD|1|a|A|543
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7BGD_022 not in the Motif Atlas
- Homologous match to IL_4LFB_021
- Geometric discrepancy: 0.3323
- The information below is about IL_4LFB_021
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.2
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
7BGD|1|a|G|523
7BGD|1|a|U|524
7BGD|1|a|G|525
7BGD|1|a|C|526
7BGD|1|a|C|527
7BGD|1|a|A|528
7BGD|1|a|G|529
*
7BGD|1|a|C|536
7BGD|1|a|G|537
7BGD|1|a|G|538
7BGD|1|a|U|539
7BGD|1|a|A|540
7BGD|1|a|A|541
7BGD|1|a|U|542
7BGD|1|a|A|543
7BGD|1|a|C|544
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain A
- mRNA
- Chain d
- 30S ribosomal protein S4
- Chain l
- 30S ribosomal protein S12
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