IL_7BGD_035
3D structure
- PDB id
- 7BGD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 30S ribosomal subunit in presence of spermidine (body only)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGAGUACG*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7BGD_035 not in the Motif Atlas
- Homologous match to IL_4LFB_034
- Geometric discrepancy: 0.1247
- The information below is about IL_4LFB_034
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_84044.2
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 6
Unit IDs
7BGD|1|a|G|897
7BGD|1|a|G|898
7BGD|1|a|A|899
7BGD|1|a|G|900
7BGD|1|a|U|901
7BGD|1|a|A|902
7BGD|1|a|C|903
7BGD|1|a|G|904
*
7BGD|1|a|U|915
7BGD|1|a|G|916
7BGD|1|a|A|917
7BGD|1|a|A|918
7BGD|1|a|A|919
7BGD|1|a|C|920
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain l
- 30S ribosomal protein S12
Coloring options: