IL_7BGD_039

3D structure

PDB id

7BGD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 30S ribosomal subunit in presence of spermidine (body only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BGD_039 not in the Motif Atlas

Homologous match to IL_5J7L_059

Geometric discrepancy: 0.189

The information below is about IL_5J7L_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.4

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

4

Unit IDs

7BGD|1|a|G|1412
7BGD|1|a|C|1413
7BGD|1|a|C|1414
7BGD|1|a|C|1415
*
7BGD|1|a|G|1509
7BGD|1|a|U|1510
7BGD|1|a|A|1511
7BGD|1|a|A|1512
7BGD|1|a|C|1513

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain A

mRNA