IL_7BGD_045

3D structure

PDB id

7BGD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 30S ribosomal subunit in presence of spermidine (body only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCGAAG*CGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BGD_045 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.3218

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_51313.1

Basepair signature

cWW-L-R-L-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

7BGD|1|a|C|1441
7BGD|1|a|C|1442
7BGD|1|a|G|1443
7BGD|1|a|A|1444
7BGD|1|a|A|1445
7BGD|1|a|G|1446
*
7BGD|1|a|C|1478
7BGD|1|a|G|1479
7BGD|1|a|A|1480
7BGD|1|a|A|1481
7BGD|1|a|G|1482

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20