IL_7BGE_005

3D structure

PDB id

7BGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 30S ribosomal subunit in presence of spermidine (head only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BGE_005 not in the Motif Atlas

Geometric match to IL_3SUX_002

Geometric discrepancy: 0.2893

The information below is about IL_3SUX_002

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.9

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

44

Unit IDs

7BGE|1|a|C|1008
7BGE|1|a|C|1009
*
7BGE|1|a|G|1053
7BGE|1|a|U|1054
7BGE|1|a|G|1055

Current chains

Chain a

16S ribosomal RNA

Nearby chains