7BGE Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7BGE_001 | 1/a/973:982 | No text annotation | homologous HL_4LFB_021 HL_97521.2 | |
| HL_7BGE_002 | 1/a/1022:1027 | GNRA | homologous HL_4LFB_022 HL_34789.5 | |
| HL_7BGE_004 | 1/a/1088:1093 | GNRA | homologous HL_5J7L_023 NA | |
| HL_7BGE_005 | 1/a/1101:1108 | T-loop related | homologous HL_4LFB_025 HL_63894.3 | |
| HL_7BGE_006 | 1/a/1144:1153 | No text annotation | ||
| HL_7BGE_007 | 1/a/1176:1182 | GNRA | homologous HL_4LFB_027 HL_34789.5 | |
| HL_7BGE_011 | 1/a/1270:1287 | No text annotation | ||
| HL_7BGE_008 | 1/a/1276:1281 | GNRA | homologous HL_5J7L_027 NA | |
| HL_7BGE_009 | 1/a/1325:1334 | T-loop with 3 stacked bulged bases | homologous HL_5J7L_028 NA | |
| HL_7BGE_010 | 1/a/1367:1377 | No text annotation | homologous HL_4LFB_030 HL_86432.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7BGE_003 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7BGE_001 | 1/a/939:941, 1/a/1398:1399 | Single stack bend | geometric IL_5TBW_009 NA | |
| IL_7BGE_002 | 1/a/942:945, 1/a/1391:1397 | No text annotation | ||
| IL_7BGE_003 | 1/a/963:964, 1/a/1237:1239 | Minor groove platform | homologous IL_4LFB_038 IL_34520.4 | |
| IL_7BGE_004 | 1/a/1003:1007, 1/a/1056:1057 | Minor groove platform | homologous IL_5J7L_043 NA | |
| IL_7BGE_005 | 1/a/1008:1009, 1/a/1053:1055 | Major groove platform | geometric IL_3SUX_002 IL_48076.9 | |
| IL_7BGE_008 | 1/a/1060:1062, 1/a/1219:1220 | Single bulged U | homologous IL_5J7L_046 NA | |
| IL_7BGE_022 | 1/a/1064:1068, 1/a/1215:1217 | No text annotation | homologous IL_6CZR_154 NA | |
| IL_7BGE_010 | 1/a/1069:1070, 1/a/1210:1214 | Minor groove platform | homologous IL_5J7L_048 NA | |
| IL_7BGE_011 | 1/a/1072:1073, 1/a/1206:1208 | Single bulged A | geometric IL_5J7L_049 NA | |
| IL_7BGE_012 | 1/a/1073:1075, 1/a/1204:1206 | Isolated non-canonical cWW pair | geometric IL_5J7L_050 NA | |
| IL_7BGE_013 | 1/a/1136:1139, 1/a/1156:1160 | Minor groove platform | homologous IL_6CZR_158 NA | |
| IL_7BGE_014 | 1/a/1141:1144, 1/a/1153:1154 | Minor groove platform | homologous IL_5J7L_052 NA | |
| IL_7BGE_015 | 1/a/1169:1172, 1/a/1186:1192 | No text annotation | homologous IL_5J7L_053 NA | |
| IL_7BGE_016 | 1/a/1258:1264, 1/a/1295:1301 | No text annotation | homologous IL_4LFB_051 IL_12056.1 | |
| IL_7BGE_017 | 1/a/1266:1269, 1/a/1288:1293 | 180 degree turn | homologous IL_5J7L_055 NA | |
| IL_7BGE_018 | 1/a/1270:1274, 1/a/1283:1287 | Double sheared with non-canonical cWW | homologous IL_5J7L_056 NA | |
| IL_7BGE_019 | 1/a/1314:1319, 1/a/1340:1345 | No text annotation | homologous IL_4LFB_055 IL_57885.3 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7BGE_020 | No text annotation | ||
| IL_7BGE_021 | No text annotation | ||
| IL_7BGE_006 | Single stack bend | ||
| IL_7BGE_007 | Minor groove platform | ||
| IL_7BGE_009 | Tandem non-canonical cWW pairs |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7BGE_001 | 1/a/946:949, 1/a/1355:1361, 1/a/1383:1390 | No text annotation | homologous J3_4LFB_002 J3_85722.2 | |
| J3_7BGE_002 | 1/a/953:956, 1/a/1246:1248, 1/a/1348:1351 | No text annotation | homologous J3_5J7L_005 NA | |
| J3_7BGE_003 | 1/a/965:972, 1/a/983:995, 1/a/1231:1236 | No text annotation | homologous J3_6CZR_062 NA | |
| J3_7BGE_004 | 1/a/1000:1003, 1/a/1057:1059, 1/a/1221:1226 | No text annotation | homologous J3_6CZR_021 NA | |
| J3_7BGE_011 | 1/a/1000:1007, 1/a/1056:1059, 1/a/1221:1226 | No text annotation | homologous J3_6CZR_063 NA | |
| J3_7BGE_005 | 1/a/1011:1018, 1/a/1031:1036, 1/a/1046:1050 | No text annotation | ||
| J3_7BGE_012 | 1/a/1011:1018, 1/a/1031:1038, 1/a/1045:1050 | No text annotation | ||
| J3_7BGE_006 | 1/a/1075:1080, 1/a/1119:1125, 1/a/1198:1204 | No text annotation | homologous J3_5J7L_008 NA | |
| J3_7BGE_013 | 1/a/1085:1086, 1/a/1095:1098, 1/a/1111:1114 | No text annotation | homologous J3_4LFB_017 J3_11018.1 | |
| J3_7BGE_008 | 1/a/1128:1130, 1/a/1166:1169, 1/a/1192:1195 | No text annotation | homologous J3_5J7L_010 NA | |
| J3_7BGE_014 | 1/a/1128:1130, 1/a/1166:1172, 1/a/1186:1195 | No text annotation | homologous J3_5J7L_054 NA | |
| J3_7BGE_009 | 1/a/1248:1252, 1/a/1307:1314, 1/a/1345:1348 | No text annotation | homologous J3_4LFB_009 J3_03192.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7BGE_010 | No text annotation | ||
| J3_7BGE_007 | No text annotation |
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