IL_7BHP_011

3D structure

PDB id

7BHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human Ebp1 - 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCGCUCGUGG*CGGCG

Length

15 nucleotides

Bulged bases

7BHP|1|L5|C|183, 7BHP|1|L5|G|188

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7BHP|1|L5|C|180
7BHP|1|L5|C|181
7BHP|1|L5|G|182
7BHP|1|L5|C|183
7BHP|1|L5|U|184
7BHP|1|L5|C|185
7BHP|1|L5|G|186
7BHP|1|L5|U|187
7BHP|1|L5|G|188
7BHP|1|L5|G|189
*
7BHP|1|L5|C|252
7BHP|1|L5|G|253
7BHP|1|L5|G|254
7BHP|1|L5|C|255
7BHP|1|L5|G|256

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LL

60S ribosomal protein L13

Chain LY

60S ribosomal protein L26

Chain Lh

60S ribosomal protein L35

Chain Lj

60S ribosomal protein L37