IL_7BHP_039

3D structure

PDB id

7BHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human Ebp1 - 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUC*GCCCG

Length

8 nucleotides

Bulged bases

7BHP|1|L5|C|1214, 7BHP|1|L5|C|1215

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BHP_039 not in the Motif Atlas

Geometric match to IL_7A0S_030

Geometric discrepancy: 0.3684

The information below is about IL_7A0S_030

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

7BHP|1|L5|C|1082
7BHP|1|L5|U|1083
7BHP|1|L5|C|1084
*
7BHP|1|L5|G|1213
7BHP|1|L5|C|1214
7BHP|1|L5|C|1215
7BHP|1|L5|C|1216
7BHP|1|L5|G|1217

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LF

60S ribosomal protein L7