3D structure

PDB id
7BHP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the human Ebp1 - 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GAU*AC
Length
5 nucleotides
Bulged bases
7BHP|1|L5|A|4292
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7BHP_122 not in the Motif Atlas
Geometric match to IL_5TBW_013
Geometric discrepancy: 0.3074
The information below is about IL_5TBW_013
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_31462.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
127

Unit IDs

7BHP|1|L5|G|4291
7BHP|1|L5|A|4292
7BHP|1|L5|U|4293
*
7BHP|1|L5|A|4317
7BHP|1|L5|C|4318

Current chains

Chain L5
28S ribosomal RNA

Nearby chains

Chain Lb
60S ribosomal protein L29
Chain Lo
60S ribosomal protein L36a

Coloring options:


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