IL_7BHP_136

3D structure

PDB id

7BHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human Ebp1 - 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

7BHP|1|L5|C|4720

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BHP_136 not in the Motif Atlas

Geometric match to IL_5J7L_256

Geometric discrepancy: 0.3422

The information below is about IL_5J7L_256

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

7BHP|1|L5|C|4582
7BHP|1|L5|C|4583
7BHP|1|L5|A|4584
7BHP|1|L5|U|4585
*
7BHP|1|L5|A|4717
7BHP|1|L5|G|4718
7BHP|1|L5|G|4719
7BHP|1|L5|C|4720
7BHP|1|L5|G|4721

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LO

60S ribosomal protein L13a