IL_7BHP_145

3D structure

PDB id

7BHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human Ebp1 - 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAGC*GAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BHP_145 not in the Motif Atlas

Geometric match to IL_6CZR_168

Geometric discrepancy: 0.2402

The information below is about IL_6CZR_168

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67743.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

9

Unit IDs

7BHP|1|L5|G|4743
7BHP|1|L5|A|4744
7BHP|1|L5|G|4745
7BHP|1|L5|C|4746
*
7BHP|1|L5|G|4954
7BHP|1|L5|A|4955
7BHP|1|L5|A|4956
7BHP|1|L5|C|4957

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain Lf

60S ribosomal protein L35a