IL_7BL2_030

3D structure

PDB id

7BL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S-ObgE particle state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGCAAG*CAACCC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BL2_030 not in the Motif Atlas

Geometric match to IL_6DVK_004

Geometric discrepancy: 0.395

The information below is about IL_6DVK_004

Detailed Annotation

tSH-tHW-tHS-cWW

Broad Annotation

No text annotation

Motif group

IL_76308.6

Basepair signature

cWW-tSH-tHW-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7BL2|1|A|G|874
7BL2|1|A|G|875
7BL2|1|A|C|876
7BL2|1|A|A|877
7BL2|1|A|A|878
7BL2|1|A|G|879
*
7BL2|1|A|C|898
7BL2|1|A|A|899
7BL2|1|A|A|900
7BL2|1|A|C|901
7BL2|1|A|C|902
7BL2|1|A|C|903

Current chains

Chain A

23S ribosomal RNA

Nearby chains