IL_7BL2_034

3D structure

PDB id

7BL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S-ObgE particle state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BL2_034 not in the Motif Atlas

Geometric match to IL_5J7L_278

Geometric discrepancy: 0.1504

The information below is about IL_5J7L_278

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

7BL2|1|A|U|1004
7BL2|1|A|C|1005
7BL2|1|A|C|1006
7BL2|1|A|C|1007
7BL2|1|A|A|1008
7BL2|1|A|A|1009
7BL2|1|A|A|1010
7BL2|1|A|G|1011
*
7BL2|1|A|C|1150
7BL2|1|A|A|1151

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L13

Chain Q

50S ribosomal protein L20