IL_7BL3_029

3D structure

PDB id

7BL3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S-ObgE particle state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCAAGG*CCAACC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BL3_029 not in the Motif Atlas

Geometric match to IL_4V88_421

Geometric discrepancy: 0.3672

The information below is about IL_4V88_421

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared related

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7BL3|1|A|G|875
7BL3|1|A|C|876
7BL3|1|A|A|877
7BL3|1|A|A|878
7BL3|1|A|G|879
7BL3|1|A|G|880
*
7BL3|1|A|C|897
7BL3|1|A|C|898
7BL3|1|A|A|899
7BL3|1|A|A|900
7BL3|1|A|C|901
7BL3|1|A|C|902

Current chains

Chain A

23S ribosomal RNA

Nearby chains