3D structure

PDB id
7BL4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
in vitro reconstituted 50S-ObgE-GMPPNP-RsfS particle
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
GGAACUG*CUAAGUAC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7BL4_006 not in the Motif Atlas
Geometric match to IL_7A0S_006
Geometric discrepancy: 0.0887
The information below is about IL_7A0S_006
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_62167.2
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
19

Unit IDs

7BL4|1|A|G|188
7BL4|1|A|G|189
7BL4|1|A|A|190
7BL4|1|A|A|191
7BL4|1|A|C|192
7BL4|1|A|U|193
7BL4|1|A|G|194
*
7BL4|1|A|C|201
7BL4|1|A|U|202
7BL4|1|A|A|203
7BL4|1|A|A|204
7BL4|1|A|G|205
7BL4|1|A|U|206
7BL4|1|A|A|207
7BL4|1|A|C|208

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain L
50S ribosomal protein L15
Chain X
50S ribosomal protein L28

Coloring options:


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