IL_7BL4_068

3D structure

PDB id

7BL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

in vitro reconstituted 50S-ObgE-GMPPNP-RsfS particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

7BL4|1|A|A|1801, 7BL4|1|A|C|1816, 7BL4|1|A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BL4_068 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.0967

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7BL4|1|A|U|1798
7BL4|1|A|G|1799
7BL4|1|A|C|1800
7BL4|1|A|A|1801
7BL4|1|A|A|1802
7BL4|1|A|A|1803
7BL4|1|A|C|1804
*
7BL4|1|A|G|1813
7BL4|1|A|G|1814
7BL4|1|A|A|1815
7BL4|1|A|C|1816
7BL4|1|A|G|1817
7BL4|1|A|U|1818
7BL4|1|A|A|1819
7BL4|1|A|U|1820
7BL4|1|A|A|1821

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2