IL_7BL4_083

3D structure

PDB id

7BL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

in vitro reconstituted 50S-ObgE-GMPPNP-RsfS particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

7BL4|1|A|U|2111, 7BL4|1|A|U|2118

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BL4_083 not in the Motif Atlas

Homologous match to IL_3U4M_002

Geometric discrepancy: 0.4549

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

7BL4|1|A|G|2110
7BL4|1|A|U|2111
7BL4|1|A|G|2112
7BL4|1|A|U|2113
7BL4|1|A|A|2114
7BL4|1|A|G|2115
7BL4|1|A|G|2116
7BL4|1|A|A|2117
7BL4|1|A|U|2118
7BL4|1|A|A|2119
7BL4|1|A|G|2120
*
7BL4|1|A|C|2178
7BL4|1|A|C|2179

Current chains

Chain A

23S ribosomal RNA

Nearby chains