IL_7BL4_084

3D structure

PDB id

7BL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

in vitro reconstituted 50S-ObgE-GMPPNP-RsfS particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGAGG*CCGACCUUGAAAUAC

Length

20 nucleotides

Bulged bases

7BL4|1|A|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BL4_084 not in the Motif Atlas

Homologous match to IL_5J7L_329

Geometric discrepancy: 0.3565

The information below is about IL_5J7L_329

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_87290.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

7BL4|1|A|G|2124
7BL4|1|A|G|2125
7BL4|1|A|A|2126
7BL4|1|A|G|2127
7BL4|1|A|G|2128
*
7BL4|1|A|C|2160
7BL4|1|A|C|2161
7BL4|1|A|G|2162
7BL4|1|A|A|2163
7BL4|1|A|C|2164
7BL4|1|A|C|2165
7BL4|1|A|U|2166
7BL4|1|A|U|2167
7BL4|1|A|G|2168
7BL4|1|A|A|2169
7BL4|1|A|A|2170
7BL4|1|A|A|2171
7BL4|1|A|U|2172
7BL4|1|A|A|2173
7BL4|1|A|C|2174

Current chains

Chain A

23S ribosomal RNA

Nearby chains