IL_7BL5_070

3D structure

PDB id

7BL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S-ObgE particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCGG*CG

Length

6 nucleotides

Bulged bases

7BL5|1|A|C|1838

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BL5_070 not in the Motif Atlas

Homologous match to IL_5J7L_314

Geometric discrepancy: 0.2997

The information below is about IL_5J7L_314

Detailed Annotation

Minor groove platform, major groove intercalation

Broad Annotation

Minor groove platform, major groove intercalation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

7BL5|1|A|C|1837
7BL5|1|A|C|1838
7BL5|1|A|G|1839
7BL5|1|A|G|1840
*
7BL5|1|A|C|1902
7BL5|1|A|G|1903

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 7

Ribosomal large subunit pseudouridine synthase D

Chain 8

UPF0307 protein YjgA

Chain C

50S ribosomal protein L2