IL_7BL5_095

3D structure

PDB id

7BL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S-ObgE particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGUC*GACAG

Length

9 nucleotides

Bulged bases

7BL5|1|A|A|2602

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BL5_095 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.3337

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

7BL5|1|A|C|2591
7BL5|1|A|G|2592
7BL5|1|A|U|2593
7BL5|1|A|C|2594
*
7BL5|1|A|G|2599
7BL5|1|A|A|2600
7BL5|1|A|C|2601
7BL5|1|A|A|2602
7BL5|1|A|G|2603

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 9

GTPase ObgE/CgtA

Chain C

50S ribosomal protein L2