IL_7BL5_117

3D structure

PDB id

7BL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S-ObgE particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BL5_117 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.2105

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7BL5|1|A|U|1851
7BL5|1|A|U|1852
7BL5|1|A|A|1853
7BL5|1|A|A|1854
7BL5|1|A|U|1855
7BL5|1|A|U|1856
7BL5|1|A|G|1857
7BL5|1|A|A|1858
7BL5|1|A|U|1859
7BL5|1|A|G|1860
*
7BL5|1|A|U|1882
7BL5|1|A|U|1883
7BL5|1|A|G|1884
7BL5|1|A|A|1885
7BL5|1|A|U|1886
7BL5|1|A|C|1887
7BL5|1|A|G|1888
7BL5|1|A|A|1889
7BL5|1|A|A|1890
7BL5|1|A|G|1891

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 8

UPF0307 protein YjgA