IL_7BL5_122

3D structure

PDB id

7BL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S-ObgE particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAUG*CUUUA

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BL5_122 not in the Motif Atlas

Geometric match to IL_8D29_010

Geometric discrepancy: 0.3489

The information below is about IL_8D29_010

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

7BL5|1|A|U|2106
7BL5|1|A|G|2107
7BL5|1|A|A|2108
7BL5|1|A|U|2109
7BL5|1|A|G|2110
*
7BL5|1|A|C|2179
7BL5|1|A|U|2180
7BL5|1|A|U|2181
7BL5|1|A|U|2182
7BL5|1|A|A|2183

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 8

UPF0307 protein YjgA