IL_7BL6_122

3D structure

PDB id

7BL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S-ObgE-GMPPNP particle

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

7BL6|1|A|U|2491

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BL6_122 not in the Motif Atlas

Homologous match to IL_5J7L_337

Geometric discrepancy: 0.1811

The information below is about IL_5J7L_337

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

7BL6|1|A|A|2459
7BL6|1|A|U|2460
7BL6|1|A|A|2461
*
7BL6|1|A|U|2489
7BL6|1|A|G|2490
7BL6|1|A|U|2491
7BL6|1|A|U|2492
7BL6|1|A|U|2493

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 9

GTPase ObgE/CgtA

Chain M

50S ribosomal protein L16