RNA 3D Hub //

7BL6 Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7BL6_0111/A/327:335T-loop with unstacked turn
homologous
HL_5J7L_144
NA
HL_7BL6_0121/A/381:393No text annotation
homologous
HL_4WF9_013
HL_69139.1
HL_7BL6_0171/A/566:575T-loop with 2 bulged bases not stacked
geometric
HL_3F2X_004
HL_13999.3
HL_7BL6_0221/A/744:753No text annotation
homologous
HL_4WF9_023
HL_50204.1
HL_7BL6_0401/A/1612:1619No text annotation
homologous
HL_7A0S_040
HL_28592.2
HL_7BL6_0451/A/1777:1787No text annotation
homologous
HL_4WF9_043
HL_87681.1
HL_7BL6_0501/A/2027:2036No text annotation
homologous
HL_4WF9_047
HL_78372.1

Problematic loops

#loop idProblemSequence
HL_7BL6_001No text annotation
HL_7BL6_002tRNA anticodon loop
HL_7BL6_072No text annotation
HL_7BL6_003No text annotation
HL_7BL6_073No text annotation
HL_7BL6_004UNCG
HL_7BL6_005No text annotation
HL_7BL6_006No text annotation
HL_7BL6_007No text annotation
HL_7BL6_008No text annotation
HL_7BL6_009T-loop with 1 bulged base
HL_7BL6_010No text annotation
HL_7BL6_013Pseudoknot geometry
HL_7BL6_014GNRA
HL_7BL6_015GNRA
HL_7BL6_016No text annotation
HL_7BL6_018No text annotation
HL_7BL6_019GNRA
HL_7BL6_020No text annotation
HL_7BL6_021GNRA wlth tandem sheared
HL_7BL6_023UNCG variation
HL_7BL6_024No text annotation
HL_7BL6_025No text annotation
HL_7BL6_026tRNA anticodon loop
HL_7BL6_078GNRA
HL_7BL6_027No text annotation
HL_7BL6_028No text annotation
HL_7BL6_029GNRA wlth tandem sheared
HL_7BL6_030Externally structured
HL_7BL6_031GNRA
HL_7BL6_032T-loop with 2 stacked bulged bases
HL_7BL6_033Pseudoknot geometry with 3' bulge
HL_7BL6_034GNRA
HL_7BL6_035No text annotation
HL_7BL6_036Mini UNCG with extended bulge
HL_7BL6_037Pseudoknot geometry with 3' bulge
HL_7BL6_038UNCG
HL_7BL6_039Mini UNCG
HL_7BL6_041GNRA
HL_7BL6_042UNCG
HL_7BL6_043No text annotation
HL_7BL6_044No text annotation
HL_7BL6_046GNRA related
HL_7BL6_047GNRA variation
HL_7BL6_048No text annotation
HL_7BL6_049No text annotation
HL_7BL6_074No text annotation
HL_7BL6_051No text annotation
HL_7BL6_052No text annotation
HL_7BL6_053No text annotation
HL_7BL6_054No text annotation
HL_7BL6_055No text annotation
HL_7BL6_075No text annotation
HL_7BL6_056Pseudoknot geometry
HL_7BL6_057GNRA
HL_7BL6_058GNRA
HL_7BL6_059No text annotation
HL_7BL6_060No text annotation
HL_7BL6_076No text annotation
HL_7BL6_077No text annotation
HL_7BL6_061GNRA variation
HL_7BL6_062No text annotation
HL_7BL6_063GNRA
HL_7BL6_064GNRA
HL_7BL6_065Ribsomal LSU H95
HL_7BL6_066No text annotation
HL_7BL6_067Mini UNCG
HL_7BL6_068No text annotation
HL_7BL6_069GNRA
HL_7BL6_070No text annotation
HL_7BL6_071Mini UNCG

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7BL6_0111/A/481:484,
1/A/496:509		No text annotation
homologous
IL_5J7L_255
NA
IL_7BL6_0161/A/674:678,
1/A/799:806		tHW-tHW cross-strand stack
geometric
IL_7RQB_018
NA
IL_7BL6_0311/A/994:996,
1/A/1159:1160		Single bulged C
homologous
IL_7RQB_035
NA
IL_7BL6_0321/A/998:1002,
1/A/1153:1157		UAA/GAN
homologous
IL_7A0S_033
IL_08938.1
IL_7BL6_0351/A/1018:1024,
1/A/1140:1144		Kink-turn related
homologous
IL_4WF9_039
IL_57188.6
IL_7BL6_0421/A/1196:1198,
1/A/1247:1250		Isolated cWS basepair
homologous
IL_7A0S_041
IL_42997.5
IL_7BL6_0521/A/1432:1435,
1/A/1557:1561		Tandem non-canonical cWW pairs
homologous
IL_5J7L_296
NA
IL_7BL6_0611/A/1663:1665,
1/A/1995:1997		Isolated tWW turn
homologous
IL_4WF9_063
IL_10432.1
IL_7BL6_0681/A/1798:1804,
1/A/1813:1821		Kink-turn related
homologous
IL_7A0S_065
IL_17069.6
IL_7BL6_0701/A/1841:1842,
1/A/1898:1901		Major groove intercalation
homologous
IL_5J7L_315
NA
IL_7BL6_0761/A/2054:2056,
1/A/2612:2615		No text annotation
homologous
IL_5J7L_321
NA
IL_7BL6_0951/A/2510:2512,
1/A/2574:2578		Isolated non-canonical cWW with bulges
homologous
IL_4WF9_095
IL_68118.3
IL_7BL6_0961/A/2512:2513,
1/A/2571:2574		No text annotation
geometric
IL_4WF9_096
IL_44609.2
IL_7BL6_1021/A/2687:2691,
1/A/2718:2722		UAA/GAN related, with intercalation
homologous
IL_5J7L_348
NA
IL_7BL6_1031/A/2695:2696,
1/A/2711:2714		Multiple bulged bases
homologous
IL_5J7L_349
NA

Problematic loops

#loop idProblemSequence
IL_7BL6_001Triple sheared with non-canonical cWW
IL_7BL6_002Single bulged A
IL_7BL6_003Minor groove platform
IL_7BL6_004No text annotation
IL_7BL6_115No text annotation
IL_7BL6_005Single stack bend
IL_7BL6_0068x7 Sarcin-Ricin; G-bulge
IL_7BL6_0077x6 Sarcin-Ricin; G-bulge
IL_7BL6_008No text annotation
IL_7BL6_009No text annotation
IL_7BL6_010No text annotation
IL_7BL6_012Double sheared
IL_7BL6_013Isolated non-canonical cWW pair
IL_7BL6_014AAA cross-strand stack
IL_7BL6_015Isolated non-canonical cWW pair
IL_7BL6_017Single bulged A
IL_7BL6_018Single bulged G
IL_7BL6_019Triple sheared
IL_7BL6_020Major groove platform
IL_7BL6_021Multiple bulged bases
IL_7BL6_02290 degree turn
IL_7BL6_116No text annotation
IL_7BL6_023Stack outside cWW
IL_7BL6_024Single stack bend
IL_7BL6_0257x7 Sarcin-Ricin with intercalated A; G-bulge
IL_7BL6_026Single bulged G
IL_7BL6_027C-loop with bulged stacked A's
IL_7BL6_028Isolated non-canonical cWW pair
IL_7BL6_029Double sheared with non-canonical cWW
IL_7BL6_124No text annotation
IL_7BL6_030Isolated non-canonical cWW pair
IL_7BL6_033SSU/LSU pseudoknot
IL_7BL6_034Single bulged U
IL_7BL6_036No text annotation
IL_7BL6_037Isolated non-canonical cWW pair
IL_7BL6_038Tandem non-canonical cWW pairs
IL_7BL6_117Kink-turn
IL_7BL6_039No text annotation
IL_7BL6_040No text annotation
IL_7BL6_041Multiple bulged bases
IL_7BL6_043No text annotation
IL_7BL6_044Kink-turn
IL_7BL6_0458x7 Sarcin-Ricin; G-bulge
IL_7BL6_046Major groove platform; stack outside cWW
IL_7BL6_047C-loop
IL_7BL6_048UAA/GAN
IL_7BL6_049tSH-tHW-tHS
IL_7BL6_050No text annotation
IL_7BL6_051UAA/GAN
IL_7BL6_053tSH-tHW
IL_7BL6_054Single bulged U
IL_7BL6_055No text annotation
IL_7BL6_056tSH-tHW-tHS
IL_7BL6_057180 degree turn
IL_7BL6_058Single bulged A
IL_7BL6_059UAA/GAN variation
IL_7BL6_060No text annotation
IL_7BL6_062Major groove platform; stack outside cWW
IL_7BL6_118No text annotation
IL_7BL6_063Intercalated tWH
IL_7BL6_064tSH-tSH-tHH-tHS
IL_7BL6_119No text annotation
IL_7BL6_0656x5 Sarcin-Ricin; G-bulge
IL_7BL6_066Triple sheared
IL_7BL6_067Single bulged A
IL_7BL6_069Minor groove platform, major groove intercalation
IL_7BL6_071Major groove minor groove platform; mini C-loop
IL_7BL6_120No text annotation
IL_7BL6_072UAA/GAN related
IL_7BL6_073Bulged stacked bases
IL_7BL6_074No text annotation
IL_7BL6_075Major groove platform
IL_7BL6_077Single bulged U
IL_7BL6_078Minor groove platform
IL_7BL6_079Isolated tHS basepair with bulges
IL_7BL6_080Isolated non-canonical cWW pair
IL_7BL6_081Isolated non-canonical cWW pair
IL_7BL6_082Isolated non-canonical cWW pair
IL_7BL6_083No text annotation
IL_7BL6_084Kink-turn related
IL_7BL6_085No text annotation
IL_7BL6_086Single bulged U
IL_7BL6_087Double sheared
IL_7BL6_088Isolated cWS basepair
IL_7BL6_121No text annotation
IL_7BL6_089Major groove platform
IL_7BL6_090Major groove platform
IL_7BL6_122Major groove minor groove platform with extra cWW
IL_7BL6_091No text annotation
IL_7BL6_092Single stack bend
IL_7BL6_093UAA/GAN related
IL_7BL6_094Major groove platform
IL_7BL6_097Major groove platform with intercalation
IL_7BL6_098Single bulged A
IL_7BL6_099tSH-tHS-tHW
IL_7BL6_100Sarcin-Ricin target in LSU H95; G-bulge
IL_7BL6_101C-loop
IL_7BL6_104UAA/GAN with extra cWW
IL_7BL6_105Single bulged A
IL_7BL6_106No text annotation
IL_7BL6_107Major groove intercalation
IL_7BL6_123No text annotation
IL_7BL6_108Multiple bulged bases with non-canonical cWW
IL_7BL6_109tHS double platform
IL_7BL6_110Major groove intercalation
IL_7BL6_111No text annotation
IL_7BL6_125Major groove minor groove platform; mini C-loop
IL_7BL6_112No text annotation
IL_7BL6_113Symmetric double minor groove platform
IL_7BL6_114Bacterial 5S Loop E

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7BL6_0021/A/56:57,
1/A/70:76,
1/A/110:114		No text annotation
homologous
J3_5J7L_037
NA
J3_7BL6_0031/A/683:689,
1/A/773:775,
1/A/791:794		No text annotation
homologous
J3_5J7L_038
NA
J3_7BL6_0081/A/1344:1349,
1/A/1382:1385,
1/A/1402:1403		No text annotation
homologous
J3_5J7L_043
NA
J4_7BL6_0121/A/1270:1276,
1/A/1294:1295,
1/A/1645:1648,
1/A/2009:2010		No text annotation
homologous
J4_5J7L_021
NA
J4_7BL6_0051/A/1310:1314,
1/A/1338:1343,
1/A/1404:1405,
1/A/1597:1604		No text annotation
homologous
J4_5J7L_022
NA
J4_7BL6_0061/A/1313:1314,
1/A/1338:1343,
1/A/1404:1405,
1/A/1597:1603		No text annotation
homologous
J4_5J7L_023
NA
J4_7BL6_0081/A/1772:1776,
1/A/1788:1792,
1/A/1827:1830,
1/A/1975:1979		No text annotation
homologous
J4_5J7L_025
NA
J5_7BL6_0031/A/584:589,
1/A/668:671,
1/A/809:812,
1/A/1195:1196,
1/A/1250:1256		No text annotation
homologous
J5_5J7L_015
NA
J5_7BL6_0051/A/2057:2064,
1/A/2446:2454,
1/A/2498:2506,
1/A/2583:2588,
1/A/2606:2611		No text annotation
J6_7BL6_0011/A/45:46,
1/A/179:183,
1/A/214:224,
1/A/231:235,
1/A/262:266,
1/A/426:433		No text annotation
J7_7BL6_0011/A/8:15,
1/A/525:531,
1/A/2018:2023,
1/A/2040:2043,
1/A/2625:2630,
1/A/2788:2789,
1/A/2894:2895		No text annotation
J7_7BL6_0021/A/817:822,
1/A/835:838,
1/A/940:946,
1/A/971:976,
1/A/987:991,
1/A/1163:1164,
1/A/1185:1190		No text annotation

Problematic loops

#loop idProblemSequence
J3_7BL6_001No text annotation
J3_7BL6_015No text annotation
J3_7BL6_004No text annotation
J3_7BL6_005No text annotation
J3_7BL6_006No text annotation
J3_7BL6_007No text annotation
J3_7BL6_016No text annotation
J3_7BL6_009Kink-turn 3-way junction
J3_7BL6_017No text annotation
J3_7BL6_010No text annotation
J3_7BL6_011No text annotation
J3_7BL6_012No text annotation
J3_7BL6_013No text annotation
J3_7BL6_014No text annotation
J4_7BL6_001No text annotation
J4_7BL6_002No text annotation
J4_7BL6_003No text annotation
J4_7BL6_004No text annotation
J4_7BL6_007No text annotation
J4_7BL6_009No text annotation
J4_7BL6_010No text annotation
J4_7BL6_011No text annotation
J5_7BL6_001No text annotation
J5_7BL6_002No text annotation
J5_7BL6_004No text annotation
J5_7BL6_006No text annotation

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