IL_7BOD_041

3D structure

PDB id

7BOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state M (body domain)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

G(4OC)CC*G(UR3)AAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4OC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BOD_041 not in the Motif Atlas

Homologous match to IL_5J7L_059

Geometric discrepancy: 0.1331

The information below is about IL_5J7L_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.4

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

4

Unit IDs

7BOD|1|A|G|1401
7BOD|1|A|4OC|1402
7BOD|1|A|C|1403
7BOD|1|A|C|1404
*
7BOD|1|A|G|1497
7BOD|1|A|UR3|1498
7BOD|1|A|A|1499
7BOD|1|A|A|1500
7BOD|1|A|C|1501

Current chains

Chain A

16S rRNA (body domain of 30S subunit)

Nearby chains