IL_7BOD_052

3D structure

PDB id

7BOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state M (body domain)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

(5MC)AC*GAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BOD_052 not in the Motif Atlas

Geometric match to IL_4P3T_002

Geometric discrepancy: 0.3493

The information below is about IL_4P3T_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01472.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

7BOD|1|A|5MC|1407
7BOD|1|A|A|1408
7BOD|1|A|C|1409
*
7BOD|1|A|G|1491
7BOD|1|A|A|1492
7BOD|1|A|A|1493
7BOD|1|A|G|1494

Current chains

Chain A

16S rRNA (body domain of 30S subunit)

Nearby chains

Chain L

30S ribosomal protein S12