IL_7BOE_012

3D structure

PDB id

7BOE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state M (Consensus refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

7BOE|1|A|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BOE_012 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.097

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

7BOE|1|A|G|147
7BOE|1|A|G|148
7BOE|1|A|A|149
7BOE|1|A|U|150
7BOE|1|A|A|151
7BOE|1|A|A|152
7BOE|1|A|C|153
*
7BOE|1|A|G|168
7BOE|1|A|C|169
7BOE|1|A|U|170
7BOE|1|A|A|171
7BOE|1|A|A|172
7BOE|1|A|U|173
7BOE|1|A|A|174
7BOE|1|A|C|175

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20