IL_7BOI_041

3D structure

PDB id

7BOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state F (multibody refinement for body domain of 30S ribosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

G(4OC)CC*G(UR3)AAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4OC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BOI_041 not in the Motif Atlas

Homologous match to IL_5J7L_059

Geometric discrepancy: 0.1443

The information below is about IL_5J7L_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.4

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

4

Unit IDs

7BOI|1|A|G|1401
7BOI|1|A|4OC|1402
7BOI|1|A|C|1403
7BOI|1|A|C|1404
*
7BOI|1|A|G|1497
7BOI|1|A|UR3|1498
7BOI|1|A|A|1499
7BOI|1|A|A|1500
7BOI|1|A|C|1501

Current chains

Chain A

16S rRNA

Nearby chains

Chain W

Small ribosomal subunit biogenesis GTPase RsgA