3D structure

PDB id
7BOI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Bacterial 30S ribosomal subunit assembly complex state F (multibody refinement for body domain of 30S ribosome)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.98 Å

Loop

Sequence
(5MC)AC*GAAG
Length
7 nucleotides
Bulged bases
7BOI|1|A|A|1493
QA status
Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7BOI_052 not in the Motif Atlas
Geometric match to IL_5T3K_001
Geometric discrepancy: 0.2312
The information below is about IL_5T3K_001
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_57744.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
22

Unit IDs

7BOI|1|A|5MC|1407
7BOI|1|A|A|1408
7BOI|1|A|C|1409
*
7BOI|1|A|G|1491
7BOI|1|A|A|1492
7BOI|1|A|A|1493
7BOI|1|A|G|1494

Current chains

Chain A
16S rRNA

Nearby chains

Chain L
30S ribosomal protein S12
Chain W
Small ribosomal subunit biogenesis GTPase RsgA

Coloring options:


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