IL_7BT6_028

3D structure

PDB id

7BT6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.12 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BT6_028 not in the Motif Atlas

Homologous match to IL_8C3A_028

Geometric discrepancy: 0.1545

The information below is about IL_8C3A_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7BT6|1|1|C|758
7BT6|1|1|U|759
7BT6|1|1|G|760
7BT6|1|1|A|761
7BT6|1|1|U|762
7BT6|1|1|G|763
*
7BT6|1|1|C|768
7BT6|1|1|G|769
7BT6|1|1|G|770
7BT6|1|1|A|771
7BT6|1|1|U|772
7BT6|1|1|G|773

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain L

60S ribosomal protein L13-A

Chain a

60S ribosomal protein L28