IL_7BT6_034

3D structure

PDB id

7BT6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.12 Å

Loop

Sequence

UCUG*CGA

Length

7 nucleotides

Bulged bases

7BT6|1|1|U|874

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BT6_034 not in the Motif Atlas

Geometric match to IL_4V9F_097

Geometric discrepancy: 0.3175

The information below is about IL_4V9F_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

7BT6|1|1|U|872
7BT6|1|1|C|873
7BT6|1|1|U|874
7BT6|1|1|G|875
*
7BT6|1|1|C|886
7BT6|1|1|G|887
7BT6|1|1|A|888

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain B

60S ribosomal protein L3