IL_7BT6_093

3D structure

PDB id

7BT6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.12 Å

Loop

Sequence

UA*UAAG

Length

6 nucleotides

Bulged bases

7BT6|1|1|A|2911

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BT6_093 not in the Motif Atlas

Homologous match to IL_5TBW_111

Geometric discrepancy: 0.211

The information below is about IL_5TBW_111

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_95601.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

7BT6|1|1|U|2891
7BT6|1|1|A|2892
*
7BT6|1|1|U|2909
7BT6|1|1|A|2910
7BT6|1|1|A|2911
7BT6|1|1|G|2912

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain H

60S ribosomal protein L9-A

Chain r

Ribosome biogenesis protein NSA2

Chain z

UPF0642 protein YBL028C