IL_7BT6_106

3D structure

PDB id

7BT6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.12 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

7BT6|1|1|U|3198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BT6_106 not in the Motif Atlas

Homologous match to IL_5TBW_125

Geometric discrepancy: 0.1407

The information below is about IL_5TBW_125

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7BT6|1|1|C|3193
7BT6|1|1|C|3194
*
7BT6|1|1|G|3197
7BT6|1|1|U|3198
7BT6|1|1|G|3199

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain H

60S ribosomal protein L9-A

Chain M

60S ribosomal protein L14-A

Chain O

60S ribosomal protein L16-A