3D structure

PDB id
7BT6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.12 Å

Loop

Sequence
AUC*GU
Length
5 nucleotides
Bulged bases
7BT6|1|1|U|14
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7BT6_129 not in the Motif Atlas
Homologous match to IL_8P9A_232
Geometric discrepancy: 0.3317
The information below is about IL_8P9A_232
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_89505.4
Basepair signature
cWW-L-cWW
Number of instances in this motif group
117

Unit IDs

7BT6|1|1|A|13
7BT6|1|1|U|14
7BT6|1|1|C|15
*
7BT6|1|2|G|144
7BT6|1|2|U|145

Current chains

Chain 1
RDN25-1 rRNA
Chain 2
RDN5.8-1 rRNA

Nearby chains

Chain G
60S ribosomal protein L8-A
Chain N
60S ribosomal protein L15-A

Coloring options:


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