IL_7BTB_023

3D structure

PDB id

7BTB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

GGGG*UGCAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BTB_023 not in the Motif Atlas

Homologous match to IL_8C3A_025

Geometric discrepancy: 0.1887

The information below is about IL_8C3A_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07235.3

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

7BTB|1|1|G|725
7BTB|1|1|G|726
7BTB|1|1|G|727
7BTB|1|1|G|728
*
7BTB|1|1|U|741
7BTB|1|1|G|742
7BTB|1|1|C|743
7BTB|1|1|A|744
7BTB|1|1|C|745

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain Q

60S ribosomal protein L18-A