IL_7BTB_061

3D structure

PDB id

7BTB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

UUAAC*GGAAGA

Length

11 nucleotides

Bulged bases

7BTB|1|1|G|1751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BTB_061 not in the Motif Atlas

Homologous match to IL_8C3A_077

Geometric discrepancy: 0.0761

The information below is about IL_8C3A_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69313.1

Basepair signature

cWW-tWH-tHH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

7BTB|1|1|U|1694
7BTB|1|1|U|1695
7BTB|1|1|A|1696
7BTB|1|1|A|1697
7BTB|1|1|C|1698
*
7BTB|1|1|G|1747
7BTB|1|1|G|1748
7BTB|1|1|A|1749
7BTB|1|1|A|1750
7BTB|1|1|G|1751
7BTB|1|1|A|1752

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain g

60S ribosomal protein L34-A

Chain k

60S ribosomal protein L38