IL_7BTB_116

3D structure

PDB id

7BTB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

CC*GUUG

Length

6 nucleotides

Bulged bases

7BTB|1|1|U|3354, 7BTB|1|1|U|3355

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BTB_116 not in the Motif Atlas

Homologous match to IL_8C3A_142

Geometric discrepancy: 0.4106

The information below is about IL_8C3A_142

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

7BTB|1|1|C|3349
7BTB|1|1|C|3350
*
7BTB|1|1|G|3353
7BTB|1|1|U|3354
7BTB|1|1|U|3355
7BTB|1|1|G|3356

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains