IL_7BTB_124

3D structure

PDB id

7BTB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

AGUG*CAU

Length

7 nucleotides

Bulged bases

7BTB|1|3|U|86

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BTB_124 not in the Motif Atlas

Homologous match to IL_8C3A_149

Geometric discrepancy: 0.5751

The information below is about IL_8C3A_149

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

7BTB|1|3|A|84
7BTB|1|3|G|85
7BTB|1|3|U|86
7BTB|1|3|G|87
*
7BTB|1|3|C|94
7BTB|1|3|A|95
7BTB|1|3|U|96

Current chains

Chain 3

RDN5-2 rRNA

Nearby chains