IL_7BTB_133

3D structure

PDB id

7BTB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

UCAAAGU*AACCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BTB_133 not in the Motif Atlas

Homologous match to IL_8C3A_093

Geometric discrepancy: 0.2626

The information below is about IL_8C3A_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

7BTB|1|1|U|2211
7BTB|1|1|C|2212
7BTB|1|1|A|2213
7BTB|1|1|A|2214
7BTB|1|1|A|2215
7BTB|1|1|G|2216
7BTB|1|1|U|2217
*
7BTB|1|1|A|2228
7BTB|1|1|A|2229
7BTB|1|1|C|2230
7BTB|1|1|C|2231
7BTB|1|1|A|2232
7BTB|1|1|A|2233
7BTB|1|1|G|2234

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain i

60S ribosomal protein L36-A