IL_7BTB_139

3D structure

PDB id

7BTB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

AGCC*GUUGUU

Length

10 nucleotides

Bulged bases

7BTB|1|1|U|3354, 7BTB|1|1|U|3355

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BTB_139 not in the Motif Atlas

Geometric match to IL_3WBM_003

Geometric discrepancy: 0.3394

The information below is about IL_3WBM_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

7BTB|1|1|A|3347
7BTB|1|1|G|3348
7BTB|1|1|C|3349
7BTB|1|1|C|3350
*
7BTB|1|1|G|3353
7BTB|1|1|U|3354
7BTB|1|1|U|3355
7BTB|1|1|G|3356
7BTB|1|1|U|3357
7BTB|1|1|U|3358

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains