IL_7BTB_141
3D structure
- PDB id
- 7BTB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.22 Å
Loop
- Sequence
- GACCGAGUAG*CGAAACUC
- Length
- 18 nucleotides
- Bulged bases
- 7BTB|1|3|C|73
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7BTB_141 not in the Motif Atlas
- Geometric match to IL_3DIL_003
- Geometric discrepancy: 0.3543
- The information below is about IL_3DIL_003
- Detailed Annotation
- 9x8 Sarcin-Ricin with GA cWW pair; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_34470.3
- Basepair signature
- cWW-cSH-cWW-tHH-tWH-tHS-cWW-tSH-R-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
7BTB|1|3|G|71
7BTB|1|3|A|72
7BTB|1|3|C|73
7BTB|1|3|C|74
7BTB|1|3|G|75
7BTB|1|3|A|76
7BTB|1|3|G|77
7BTB|1|3|U|78
7BTB|1|3|A|79
7BTB|1|3|G|80
*
7BTB|1|3|C|100
7BTB|1|3|G|101
7BTB|1|3|A|102
7BTB|1|3|A|103
7BTB|1|3|A|104
7BTB|1|3|C|105
7BTB|1|3|U|106
7BTB|1|3|C|107
Current chains
- Chain 3
- RDN5-2 rRNA
Nearby chains
- Chain v
- Ribosome biogenesis protein RPF2
Coloring options: