IL_7BV8_072

3D structure

PDB id

7BV8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mature 50S ribosomal subunit from RrmJ knock out E.coli strain

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

7BV8|1|A|A|1938, 7BV8|1|A|U|1944, 7BV8|1|A|U|1963

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BV8_072 not in the Motif Atlas

Homologous match to IL_4WF9_077

Geometric discrepancy: 0.1452

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.1

Basepair signature

cWW-L-R-cHW-cWW-L-L-tSW-L

Number of instances in this motif group

8

Unit IDs

7BV8|1|A|C|1934
7BV8|1|A|G|1935
7BV8|1|A|A|1936
7BV8|1|A|A|1937
7BV8|1|A|A|1938
7BV8|1|A|U|1939
7BV8|1|A|U|1940
7BV8|1|A|C|1941
7BV8|1|A|C|1942
7BV8|1|A|U|1943
7BV8|1|A|U|1944
7BV8|1|A|G|1945
*
7BV8|1|A|C|1961
7BV8|1|A|C|1962
7BV8|1|A|U|1963
7BV8|1|A|G|1964

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2