3D structure

PDB id
7BV8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mature 50S ribosomal subunit from RrmJ knock out E.coli strain
Experimental method
ELECTRON MICROSCOPY
Resolution
3.14 Å

Loop

Sequence
CUAGUAC*GGACCG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7BV8_098 not in the Motif Atlas
Homologous match to IL_5J7L_346
Geometric discrepancy: 0.1154
The information below is about IL_5J7L_346
Detailed Annotation
Sarcin-Ricin target in LSU H95; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_16458.4
Basepair signature
cWW-L-R-L-R-cSH-tWH-tHS-cWW
Number of instances in this motif group
5

Unit IDs

7BV8|1|A|C|2652
7BV8|1|A|U|2653
7BV8|1|A|A|2654
7BV8|1|A|G|2655
7BV8|1|A|U|2656
7BV8|1|A|A|2657
7BV8|1|A|C|2658
*
7BV8|1|A|G|2663
7BV8|1|A|G|2664
7BV8|1|A|A|2665
7BV8|1|A|C|2666
7BV8|1|A|C|2667
7BV8|1|A|G|2668

Current chains

Chain A
23S rRNA

Nearby chains

Chain G
50S ribosomal protein L6

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1084 s