IL_7CPJ_136

3D structure

PDB id

7CPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

ycbZ-stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7CPJ_136 not in the Motif Atlas

Homologous match to IL_5J7L_023

Geometric discrepancy: 0.1382

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

7CPJ|1|a|G|450
7CPJ|1|a|A|451
7CPJ|1|a|A|452
7CPJ|1|a|G|453
7CPJ|1|a|G|454
7CPJ|1|a|G|455
*
7CPJ|1|a|C|477
7CPJ|1|a|A|478
7CPJ|1|a|U|479
7CPJ|1|a|U|480
7CPJ|1|a|G|481
7CPJ|1|a|A|482
7CPJ|1|a|C|483

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16