IL_7CPJ_183

3D structure

PDB id

7CPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

ycbZ-stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7CPJ_183 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.114

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7CPJ|1|A|U|1851
7CPJ|1|A|U|1852
7CPJ|1|A|A|1853
7CPJ|1|A|A|1854
7CPJ|1|A|U|1855
7CPJ|1|A|U|1856
7CPJ|1|A|G|1857
7CPJ|1|A|A|1858
7CPJ|1|A|U|1859
7CPJ|1|A|G|1860
*
7CPJ|1|A|U|1882
7CPJ|1|A|U|1883
7CPJ|1|A|G|1884
7CPJ|1|A|A|1885
7CPJ|1|A|U|1886
7CPJ|1|A|C|1887
7CPJ|1|A|G|1888
7CPJ|1|A|A|1889
7CPJ|1|A|A|1890
7CPJ|1|A|G|1891

Current chains

Chain A

23S ribosomal RNA

Nearby chains