IL_7CPU_010

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CGGGG*CGGCGCGCCG

Length

15 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7CPU|1|L5|C|175
7CPU|1|L5|G|176
7CPU|1|L5|G|177
7CPU|1|L5|G|189
7CPU|1|L5|G|190
*
7CPU|1|L5|C|251
7CPU|1|L5|G|252
7CPU|1|L5|G|253
7CPU|1|L5|C|254
7CPU|1|L5|G|255
7CPU|1|L5|C|256
7CPU|1|L5|G|257
7CPU|1|L5|C|258
7CPU|1|L5|C|259
7CPU|1|L5|G|260

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LL

60S ribosomal protein L13

Chain Lh

60S ribosomal protein L35

Chain Lj

60S ribosomal protein L37